XmlmmCIF equivalent: entity_src_gen Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained, in those cases where the source was a genetically manipulated one. The following are treated separately: Items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid). XmlmmCIF equivalent: entity_src_gen/expression_system_id A unique identifier for the expression system. This should be extracted from a local list of expression systems. XmlmmCIF equivalent: entity_src_gen/gene_src_common_name The common name of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/gene_src_details A description of special aspects of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/gene_src_dev_stage A string to indicate the life-cycle or cell development cycle in which the gene is expressed and the mature protein is active. XmlmmCIF equivalent: entity_src_gen/gene_src_genus The genus of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/gene_src_species The species of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/gene_src_strain The strain of the natural organism from which the gene was obtained, if relevant. XmlmmCIF equivalent: entity_src_gen/gene_src_tissue The tissue of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/gene_src_tissue_fraction The sub-cellular fraction of the tissue of the natural organism from which the gene was obtained. XmlmmCIF equivalent: entity_src_gen/host_org_common_name The common name of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/host_org_details A description of special aspects of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/host_org_genus The genus of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/host_org_species The species of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/host_org_strain The strain of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/pdbx_description Information on the source which is not given elsewhere. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_atcc American Type Culture Collection tissue culture number. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_cellCell type. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_cell_line The specific line of cells. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_cellular_location Identifies the location inside (or outside) the cell. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_fragment A domain or fragment of the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_gene Identifies the gene. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_organ Organized group of tissues that carries on a specialized function. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_organelle Organized structure within cell. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_plasmid The source plasmid. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_plasmid_name The source plasmid. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_scientific_name Scientific name of the organism. XmlmmCIF equivalent: entity_src_gen/pdbx_gene_src_variant Identifies the variant. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_atcc Americal Tissue Culture Collection of the expression system. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_cell Specific cell type which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_cell_line A specific line of cells used as the expression system. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_cellular_location Identifies the location inside (or outside) the cell which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_culture_collection Culture collection of the expression system. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_gene Specific gene which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_organ Specific organ which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_organelle Specific organelle which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_scientific_name The scientific name of the organism that served as host for the production of the entity. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_strain The strain of the organism in which the entity was expressed. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_tissue The specific tissue which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_tissue_fraction The fraction of the tissue which expressed the molecule. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_variant Variant of the organism used as the expression system. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_vector Identifies the vector used. XmlmmCIF equivalent: entity_src_gen/pdbx_host_org_vector_type Identifies the type of vector used (plasmid, virus, or cosmid). XmlmmCIF equivalent: entity_src_gen/plasmid_details A description of special aspects of the plasmid that produced the entity in the host organism. XmlmmCIF equivalent: entity_src_gen/plasmid_name The name of the plasmid that produced the entity in the host organism. XmlmmCIF equivalent: entity_src_gen/start_construct_id A pointer to _pdbx_construct.id in the PDBX_CONSTRUCT category. The indentified sequence is the initial construct. EBI Item. NCBI taxonomy id for the organism used to engineer the entity EBI Item. NCBI taxonomy id for the natural source of the entity XmlmmCIF equivalent: entity_src_gen/entity_id This data item is a pointer to _entity.id in the ENTITY category.